On a side note, I have a similar setup. This summer, I had a problem while riding out to WV on some not so smooth roads. The black feeder wire to the right side coil was hanging on by a thread and the right cylinder wasn't working--I limped into the nearest town on one cylinder (but didn't have to) at 18-22mph.
A better arrangement is to cross the plug wires such that each cylinder is getting spark from both coils all the time (there is always a wasted spark on these engines anyway). Had I done that, I could have continued with both cylinders working (although not with two plugs per).
For what its worth, I have a setup that seems to cause a lot of controversy amongst the elders but runs like a clock for me. '83 R100, factory electronic ignition, dual plugged, Accel red coils, (single) Dyna Ignition booster. Came to me that way from the PO.



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